Project Pipeline
=======================================

Classes
---------------

.. automodule:: wrapica.project_pipelines
   :members:
     ICAv2AnalysisInput,
     ICAv2PipelineAnalysisTags,
     ICAv2EngineParameters,
     ICAv2CwlAnalysisJsonInput,
     ICAv2CWLEngineParameters,
     ICAv2CWLPipelineAnalysis,
     ICAv2NextflowAnalysisInput,
     ICAv2NextflowEngineParameters,
     ICAv2NextflowPipelineAnalysis
   :undoc-members:
   :show-inheritance:
   :exclude-members:
   :no-index:


Functions
---------------

.. automodule:: wrapica.project_pipelines
   :members:
     get_project_pipeline_obj,
     get_project_pipeline_obj_from_pipeline_code,
     get_project_pipeline_id_from_pipeline_code,
     get_default_analysis_storage_obj_from_project_pipeline,
     get_default_analysis_storage_id_from_project_pipeline,
     get_project_pipeline_description_from_pipeline_id,
     get_analysis_storage_id_from_analysis_storage_size,
     coerce_pipeline_id_or_code_to_project_pipeline_obj,
     get_analysis_storage_from_analysis_storage_id,
     get_analysis_storage_from_analysis_storage_size,
     coerce_analysis_storage_id_or_size_to_analysis_storage,
     create_cwl_input_json_analysis_obj,
     launch_cwl_workflow,
     launch_nextflow_workflow,
     get_project_pipeline_input_parameters,
     get_project_pipeline_configuration_parameters,
     convert_icav2_uris_to_data_ids_from_cwl_input_json,
     convert_uris_to_data_ids_from_cwl_input_json,
     list_project_pipelines,
     is_pipeline_in_project,
     list_projects_with_pipeline,
     create_blank_params_xml,
     create_params_xml,
     release_project_pipeline,
     update_pipeline_file,
     delete_pipeline_file,
     add_pipeline_file,
     create_cwl_project_pipeline,
     create_cwl_workflow_from_zip,
     create_nextflow_pipeline_from_zip,
     create_nextflow_pipeline_from_nf_core_zip,
     create_nextflow_project_pipeline
   :undoc-members:
   :show-inheritance:
   :exclude-members: